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The new project ERA SHUTTLE – Accelerating ERA by Sharing Unique Talents for healThy Life and Environment has started in September. Its implementation was launched at the Kick-Off meeting held in wonderful Split in Croatia. The meeting has been opened by prof. Igor Jerković, Vice-Rector for Science and Quality at the University of Split. We were delighted to join this meeting as leader of the UG project team (Izabela Raszczyk) and project manager at UG (Dominika Butkiewicz). Eight Project Partners from Croatia, Malta, Germany, Netherlands, Italy and Poland met to plan, discuss and learn in order to realise all activities with success and satisfaction. ICCVS is one of the participating partners responsible for several tasks connected to capacity building and knowledge transfer, training for research talents and administrative staff.  The project is financed by the European Union in the frame of HORIZON Coordination and Support Actions. The financing granted from Horizon Europe to the consortium amounts to 3 million EUR, over 500 000 EUR is dedicated to ICCVS UG tasks.

Stay tuned for news about the upcoming activities and results of the project!

A very interesting workshop is coming this November …

Dominika Butkiewicz & Izabela Raszczyk

Between October 16 and 26, Alicja Dziadosz and Katarzyna Dziubek participated in a two-week course in animal studies, specifically focusing on patient-derived xenografting in mice. The training was organised by Dr Marina Potesta and Dr Carla Montesano as part of CANVAS project and took place in Italy at The University of Rome Tor Vergata, which is our strategic partner in the CANVAS project.

The training included both theoretical and practical aspects of work with animals. Here are the key points of the stay:

“Having no prior experience in animal work, we first learned basic animal handling and injection methods. Later, we were instructed on how to properly perform anaesthesia and approach the animal postoperative care. Finally, we proceeded to more advanced training on tumour transplantation in mice using various methods, depending on the study design and type of tumour investigated. Interestingly, in case of NSCLC tissue, the implantation success may vary between 23% and 90% depending on the method chosen for transplantation, making it a key factor for experimental outcomes,” said Katarzyna.

“Murine models are extremely valuable for the advancement of cancer studies and allow for much better similarity to the human body conditions than any other in vitro model. However, each animal study should be performed with great care to minimize animal discomfort. Moreover, having no previous experience with animal work, I realized that working with a living, moving organism is a very difficult job, also in emotional terms. This course and the people working there made me realize how important it is to put the welfare of animals first” – added Alicja.

In addition to the practical training, we participated in a workshop focused on current research projects developed at The University of Rome Tor Vergata. That included the implementation of mice studies in regenerative medicine and the impact of chemical compound in our environment on cancer development.

Interestingly, we also had a chance to meet with researchers working on the development of a hormonal vaccine to regulate the population of wild boar in Italy as a safe alternative to currently available methods.

During our free time, we explored the beautiful sites of ancient Rome, drank a lot of coffee, enjoyed pizza and pasta and of course indulged in gelato.

Alicja Dziadosz & Katarzyna Dziubek

4th International Conference on Lymphocyte Engineering, gathered together the world’s innovators in immune-gene therapy in Munich, Germany on 12-14 September 2023. Professor Natalia Marek-Trzonkowska form ICCVS took part in this interesting scientific event. She had great opportunity to refresh friendships and cooperation networks. With Anke Fuchs (Technical University of Dresden) and Marc Martinez- Llordella (Quell Therapeutics)- three members of the “Action to Focus and Accelerate Cell-based Tolerance-inducing Therapies” (COST Action).

As a student and young researcher I travelled a lot – internships, workshops, conferences. Mobility is crucial for scientists, we have to discuss, learn and interact with others. Recently, due to COVID pandemics, lots of duties on-site and becoming a mum I’ve travelled less. However, at the beginning of this year I received mobility funding as one of four winners in the latest edition of the competition International Internship Programme for University of Gdańsk Young Researchers in the frame of the  Excellence Initiative – Research University (IDUB).  Thanks to this grant I spent three months at the Institute Germans Trias i Pujol (IGTP), which is a part of Universitat Autònoma de Barcelona (UAB).

During my stay in IGTP I worked in the research group of Prof. Eva Martinez Caceres, who specializes in clinical immunology and immunotherapy. Her group developed an innovative method to treat multiple sclerosis with the use of autologous dendritic cells derived from monocytes. This therapy went through all the pre-clinical stages of testing (on cells and then model organisms) and is now in stage I/IIa clinical trial.

My stay in professor Martinez-Caceres lab was very fruitful – I learnt how to induce differentiation of monocytes into dendritic cells, how to culture them and use them in functional tests. I also tested the impact of TLR9 stimulation on monocyte-derived dendritic cells, with the use of TLR9 ligand that we developed in the ICCVS. These experiments were a part of my research task: “Optimization of co-culture conditions to maximize TLR9-mediated NK cell activation” funded by the National Centre for Science in the Miniatura 6 Programme. The skills that I’ve learnt at IGTP will be very useful in my day-to-day lab work in ICCVS where we are working on immunotherapy for non-small cell lung cancer.

The team of professor Martinez-Caceres is very young and energetic. I felt most welcome and got a lot of useful advice on my experiments with dendritic cells. During my internship I took part in weekly meetings and journal clubs, I also gave a talk describing my research at ICCVS.

Personally, this opportunity to live in Barcelona for three months was an unforgettable experience for my family. We had a great time and managed to escape from cold Polish spring…

I recently returned from a week packed with enriching learning experiences, engaging networking opportunities, and memorable adventures in the heart of Dubrovnik, Croatia. I was fortunate to participate in the 15th Mass Spectrometry in Biotechnology & Medicine (MSBM) summer school from July 2nd to July 8th, 2023.

The summer school provided a deep dive into the fundamentals and applications of mass spectrometry (MS), spanning a diverse range of fields including proteomics, metabolomics, and peptidomics, among others. The lectures delivered by renowned scientists and the hands-on workshops offered a wealth of information. In my role at ICCVS, where I apply MS to profile proteins in cancers, this was an invaluable learning opportunity. I was able to further my understanding of the latest developments in MS, grapple with its challenges, and explore promising solutions.

This MSBM summer school was a fantastic opportunity to connect with the global scientific community. I had stimulating discussions with other students, scientists, and industry professionals, learning about their work and brainstorming potential collaborations. These conversations helped broaden my perspectives and appreciate the many ways MS is pushing the boundaries of scientific research.

Aside from the intensive scientific engagements, I had the chance to take in the calming beauty of Dubrovnik. The city, with its fortified walls and beautiful beaches, offered a tranquil backdrop to our fervent scientific discourse. The trip to Lokrum island and a hike to Mount Srđ added an extra layer to my experience, making it truly unforgettable.

I wish to express my sincere appreciation to the organizers of the 15th MSBM summer school. Special thanks to Prof. David Goodlett, without whom the trip to Dubrovnik would not have been possible. I want to also give thanks to Dr. Sachin Kote and the ICCVS. The learnings and memories from this event will certainly guide my future scientific endeavors and serve as a pleasant reminder of a remarkable week spent in Dubrovnik.

Kenneth Weke

Lokrum island	View of the city from Mount Srđ

Central European Institute of Technology (CEITEC) is a renowned research institute located in the city of Brno, where I was working since mid-February until the end of June 2023. From the first day, I was actively involved in an exciting research project focused on the impact of RNA editing in lung cancer. The hands-on experience gained during conducting my experiments enriched my understanding of scientific methodologies and allowed me to feel more confident while working in the laboratory. Every day brought new challenges, sparking my creativity and enhancing my problem-solving skills.

One of the most invaluable aspects of my internship was the guidance and mentorship provided by prof. Mary O’Connell. Mary, as my supervisor, not only shared her wealth of knowledge but also encouraged me to challenge myself, fostering a sense of confidence in my abilities. Her mentorship played a pivotal role in shaping my research project, and I felt genuinely supported throughout the entire journey.

It is worth mentioning, that both ‘RNA and Immunity Laboratory’ which I was working with, as well as the whole CEITEC are a melting pot of cultures, with researchers and interns coming from all around the world. This multicultural environment not only exposed me to various perspectives but also enriched my social skills. The friendships forged during lunch breaks and coffee sessions transcended borders, making the experience all the more memorable.

Aleksandra Domin

Equally important to doing science is communicating it. Talking to people who are ‘in our field’ during scientific meeting offers an extra opportunity to grow! Not only are we moved to think how to put our research in a larger context (which we often miss when dwelling into specific question and experimental details), but we also make a room to auto-review what we have done so far and think how the results fit together and what is missing. A feedback received from other scientists, such as, for example, novel ways to address our question or an unthought explanations of our results is extremely precious and motivating. On top of that, such meetings are an outstanding opportunity for networking and finding novel collaborators.

Together with Alicja Dziadosz ( as ‘Alas Team’) we joined the 4-day 1st FEBS Redox Medicine Workshop in Luso, Portugal (22 –26 May 2023). This FEBS advanced course hosted both prominent senior researchers in the field of Redox Biology as well as young pre- and postdoctoral researchers selected from all over the world. The program has been tailored to promote an informal and relaxed environment in which science, scientific careers and personnel experiences as a scientist in the XXIst century were discussed. We had a chance to present our data and thoughts both in the form of oral presentation, as well as during poster session. Everyone from the Redox field is familiar with the transcription factor Nrf2 that we work with and we got a really nice feedback, especially concerning suggestions on mass-spec-based approaches to differentiate the Nrf2 isoforms. The meeting was held in a beautiful hotel in a village surrounded by Buçaco National Forest, hosting a number of endemic and exotic centenarian trees introduced by Portuguese mariners during the Age of Discovery as well as the Fonte Fria – an enchanting cascade fountain. It is a ‘double win’ when a good meeting is held in such a marvelous surrounding!

Short after this workshop I went to Vienna for the Annual Meeting of The Society for Free Radical Research Europe (SFRR, 06-09 June 2023). This meeting was totally different – it was a huge conference with hundreds of participants. Nevertheless, organisers took care of Early Career Scientist (ECS: Students, Postdocs and Assistant Professors) and on the first evening conducted a Meet-the-Professor session followed by the meet-and greet event for ERC only, where we had a chance to do some networking in a funny way. Poster sessions were held in a form of digital posters, divided thematically and displayed on screens one by one. Each speaker had three minutes for a presentation. Such a short time limit made me squeeze an essence from what, how and why we study. That is good when doing a science pitch, but for the posters I still prefer the classical form, where you are not constrained by time and can chat freely on your work. The special guest of the Vienna meeting was a Japanese professor, Masayuki Yamamoto, whose group have been studying molecular, structural and contextual aspects of the Nrf2-Keap1 system for years. He gave a comprehensive lecture summing up the history of Nrf2-Keap1 system discoveries. Again I received an amazing feedback and brought to Gdansk new ideas, connections and inspiration!

Alicja Sznarkowska

View of the Buçaco National Forest	Digital poster presentation in Vienna
In front of the workshop Venue at Luso	Poster session during workshop in Luso

As part of the CANVAS project, a group of scientists from ICCVS: dr Elżbieta Chruściel, Martyna Muszczek Ines Papak and Łukasz Arcimowicz participated in 3D cell culture training organised by our project partner – RealResearch in Kraków, from 12.04.2023 until 23.04.2023. During our stay, we had a great opportunity to learn more about 3D cell culture from experts as, the CEO of Real Research – dr Marcin Krzykawski and the scientists working in his team: dr Krzysztof Klimkiewicz and dr David Earnshaw. During this time, we have learnt how to work with a 3D cell culture model based on LifeGel – a unique hydrogel developed by RealResearch. We learnt how to apply it for establishing primary cell cultures using clinical samples from the patients. Incredibly, after only a few days of training, we could already see 3D structures of the established primary cell lines forming. Obtained cultures allowed us to experiment a bit more with assays that can be performed on LifeGel – we performed metabolic activity assays, viability assays and fluorescent staining. The training allowed us to work confidently with LifeGel in ICCVS laboratories in Gdańsk, enabling us to continue to work on the CANVAS project. The training also presented a great opportunity for us to discuss research ideas and acquaint ourselves with colleagues from Kraków, and thanks to Marcin’s experience, it was a remarkable lesson on how to start and develop a scientific startup company. RealResearch Team also organised events that allowed for integration between scientists from ICCVS and the hosts. We had an amazing evening of axe-throwing and virtual reality games! During our free time, we explored the breathtaking, historical capital of Poland.

Łukasz Arcimowicz

This year’s Annual Conference of the European Association of Research Managers and Administrators took place in beautiful Prague from 24-26 April. The event attracted 1.400 participants and provided a great opportunity for exchange and networking  of the research managers’ and administrators’ (RMA) community.

I had the pleasure to be involved in two poster presentions. In the first one, together with colleagues dr Lidia Tańska and Ewa Kaszewska from two other Centres of the International Research Agendas Programme (IRAP), we shared insights from organising research support in the Centres we are involved in. This was the story of the research support organisation at ICCVS – International Centre for Cancer Vaccine Science, University of Gdansk, ICTQT – International Centre for Theory of Quantum Technologies at the University of Gdańsk, and QOT – Centre for Quantum Optical Technologies at the University of Warsaw. The second poster presentation prepared together with Marta Dziedzic from the Intercollegiate Faculty of Biotechnology of UG & MUG showed some of the Gender Equality Plan (GEP) measures at the University of Gdańsk designed with input of several H2020 projects, such as STARBIOS2, ResBios and MINDtheGEPs. It is also a pleasure to report that I was also granted an EARMA Conference Speaker Travel Award.

The conference provided lots of inspiration for day-to-day management of projects, grant writing, and research support. It was also a good plaform to meet old and new friends, especially the RMAs from the SEA-EU Alliance.

Some of the insights will flow into the activities of the  Horizon Europe project CANVAS which as one of the aims targets the upgrading RMA skills and a better connection to RMA networks.

                                                                                                                                                                                                                                                                                                   Izabela Raszczyk

From October 31^st to November 3^rd 2022 we attended the third international conference on Single‐Molecule Protein Sequencing (SMPS3) in Delft, the Netherlands, bringing together leading researchers who are pioneering the development of new techniques in this field. The conference aimed to stimulate further development in the field of single‐molecule protein sequencing, which has the potential to revolutionise genomics and biomedical research, as well as open up new opportunities for single-cell proteomics and real-time medical diagnostics.

With a  poster titled “Understanding the sequencing fidelity of the pMHC‐TCR complex” presented at the conference we presented research exploring whether sequencing ambiguities in the recognition of peptides by T cell receptors can be overcome to enable high-fidelity protein sequencing. We discussed the potential of the major histocompatibility complex-T cell receptor interaction as a single-molecule protein sequencer and the implications of this for understanding cell-mediated immunity, as well as the possibility of using this technology for fighting viral infections.

In addition to the participation as an author,   one of us (Javier) had the pleasure to host an Industrial Forum session during the conference that brought together representatives from leading protein sequencing companies such as: Erisyon, Quantum-Si, Oxford Nanopore Technologies, Elements IC, and Northern Nanopore Instruments. This session provided an opportunity for the industry representatives to discuss the latest developments in protein sequencing technologies, and to explore potential collaborations with academic researchers in the field.

Overall, the conference provided an exciting opportunity for researchers in the field to share their latest findings and discuss the latest developments in single-molecule protein sequencing. The poster presented was a noteworthy contribution to the conference, highlighting the potential of this technology for understanding cell-mediated immunity. The industrial forum session also added a valuable component to the conference, providing a platform for the academia and industry to connect and explore new possibilities for future developments in the field.

                                                                                                                                                                                                                                                                                          Javier Alfaro, Aleksander Pałkowski