PUBLICATIONS

2019

  1. Kalathiya U, Padariya M, Pawlicka K,  Verma CS, Houston D, Hupp TR, Alfaro JA, Insights into the effects of cancer associated mutations at the UPF2 and ATP-Binding Sites of NMD Master Regulator: UPF1, International Journal of Molecular Sciences, 11 November 2019, doi: 10.3390/ijms20225644.
  2. Urban-Wojciuk Z, Khan MM, Oyler BL, Fahraeus R, Marek-Trzonkowska N, Nita-Lazar A, Hupp TR, Goodlett DR, The role of TLRs in anti-cancer immunity and tumor rejection, Frontiers in Immunology, 22 October 2019, doi: 10.3389/fimmu.2019.02388.

  3. Rybicka M, Woziwodzka A, Romanowski A, Sznarkowska A, Stalke P, Dręczewski M, Bielawski KP, Host genetic background affects the course of infection and treatment response in patients with chronic hepatitis B, Journal of Clinical Virology, Volume 120, November 2019, doi: 10.1016/j.jcv.2019.09.002.
  4. Dapic I, Baljeu-Neuman L, Uwugiaren N, Kers J, Goodlett DR, Corthals G, Proteome analysis of tissues by mass spectrometry, Mass Spectrometry Reviews, 7 August 2019, doi: 10.1002/mas.21598.

  5. Ryu SY, Wendt GA, Chandler CE, Ernst RK, Goodlett DR, Model-based spectral library approach for bacterial identification via membranę glycolipids, Analytical Chemistry 2019, 91, 1 August 2019, doi: 10.1021/acs.analchem.9b03340.
  6. Kote S, Faktor J, Dapic I, Mayordomo MY, Kocikowski M, Kagansky A, Goodlett DR, Vojtesek B, Hupp TR, Wilcockson D, Analysis of venom sac constituents from the solitary, aculeate wasp cerceris rybyensis, Toxicon, Volume 169, 25 July 2019, doi: 10.1016/j.toxicon.2019.07.012.

  7. Kalathiya U, Padariya M, Baginski M, Structural, functional, and stability change predictions in human telomerase upon specific point mutations, Nature, Scientific Reports, 18 June 2019, doi: 10.1038/s41598-019-45206-y.
  8. Maurel M, Obac J, Avril T, Ding Y-P, Papadodima O, Treton X, Fanny D, Pilalis E, Hörberg J, Hou W, Beauchamp M-C, Tourneur‐Marsille J, Cazals‐Hatem D, Sommerova L, Samali A, Tavernier J, Hrstka R, Dupont A, Fessart D, Delom F, Fernandez‐Zapico ME, Jansen G, Eriksson LA, Thomas DY, Jerome‐Majewska L, Hupp TR, Chatziioannou A, Chevet E, Ogier‐Denis E, Control of anterior GRadient 2 (AGR2) dimerization links endoplasmic reticulum proteostatsis to inflammation, EMBO Molecular Medicine

  9. Gliwiński M, Piotrowska M, Iwaszkiewicz-Grześ D, Urban-Wójciuk Z, Trzonkowski P, Therapy with CD4+CD25+ T regulatory cells – should we be afraid of cancer?, 5 April 2019, doi: 10.5114/wo.2019.84110.
  10. Gómez-Herranz M, Nekulova M, Faktor J, Hernychov L, Kote S, Sinclaira EH, Nenutilb R, Vojtesek B, Ball K, Hupp TR, The effects of IFITM1 and IFITM3 gene deletion on IFNγ stimulated protein synthesis, Cellular Signalling, 60(2019) 39-56, 2 April 2019, doi: 10.1016/j.cellsig.2019.03.024.

  11. Turkington RC, Knight LA, Blayney JK, Secrier M, Douglas R, Parkes EE, Sutton EK, Stevenson L, McManus D, Halliday S, McCavigan AM, Logan GE, Walker SM, Steele CJ, Perner J, Bornschein J, MacRae S, Miremadi A, McCarron E, McQuaid S, Arthur K, James JA, Eatock MM, O’Neill R, Noble F, Underwood TJ, Harkin DP, Salto-Tellez M, Fitzgerald RC, Kennedy RD. Collaborators: Noorani A, Edwards PA, Grehan N, Nutzinger B, Hughes C, Fidziukiewicz E, Crawte J, Northrop A, Contino G, LI X, La Rue R, O’donovan M, Malhotra S, Tripathi M, Tavaré S, Lynch AG, Eldridge M, Bower L, Devonshire G, Jammula S, Davies J, Crichton C, Carroll N, Safranek P, Hindmarsh A, Sujendran V, Hayes SJ, Ang Y, Preston SR, Oakes S, Bagwan I, Save V, Skipworth RJ, Hupp TR, Tucker O, Beggs A, Taniere P, Puig S, Owsley J, Barr H, Shepherd N, Old O, Lagergren J, Gossage J, Davies A, Chang F, Zylstra J, Mahadeva U, Goh V, Ciccarelli FD, Sanders G, Berrisford R, Harden C, Lewis M, Cheong E, Kumar B, Parsons SL, Soomro I, Kaye P, Saunders J, Lovat L, Haidry R, Igali L, Scott M, Sothi S, Suortamo S, Lishman S, Hanna GB, Moorthy K, Peters CJ, Grabowska A, Coleman H, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Study Group: Immune activation by DNA damage predicts response to chemotherapy and survival in oesophageal adenocarcinoma, Gut. 2019 Mar 9. pii: gutjnl-2018-317624. doi: 10.1136/gutjnl-2018-317624.

  12. Haronikova L, Olivares-Illana V, Wang L, Karakostis K, Chen S, Fahraeus R, The p53 mRNA: an integral part of the cellular stress response, Nucleic Acids Research Res, 4 March 2019, doi: 10.1093/nar/gkz124.
  13. Frankell AM, Jammula S, Li X, Contino G, Killcoyne S, Abbas S, Perner J, Bower L, Devonshire G, Ococks E, Grehan N, Mok 1, O’Donovan M, MacRae S1, Eldridge MD2, Tavaré S2; Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium, Fitzgerald RC4. Collaborators: Fitzgerald RC, Noorani A, Edwards PAW, Grehan N, Nutzinger B, Hughes C, Fidziukiewicz E, MacRae S, Northrop A, Contino G, Li X, de la Rue R, Katz-Summercorn A, Abbas S, Loureda D, O’Donovan M, Miremadi A, Malhotra S, Tripathi M, Tavaré S, Lynch AG, Eldridge M, Secrier M, Devonshire G, Perner J, Jammula S, Davies J, Crichton C, Carroll N, Safranek P, Hindmarsh A, Sujendran V, Hayes SJ, Ang Y, Sharrocks A, Preston SR, Oakes S, Bagwan I, Save V, Skipworth RJE, Hupp TR, O’Neill JR, Tucker O, Beggs A, Taniere P, Puig S, Underwood TJ, Walker RC, Grace BL, Barr H, Shepherd N, Old O, Lagergren J, Gossage J, Davies A, Chang F, Zylstra J, Mahadeva U, Goh V, Ciccarelli FD, Sanders G, Berrisford R, Harden C, Lewis M, Cheong E, Kumar B, Parsons SL, Soomro I, Kaye P, Saunders J, Lovat L, Haidry R, Igali L, Scott M, Sothi S, Suortamo S, Lishman S, Hanna GB, Moorthy K, Peters CJ, Grabowska A, Turkington R, McManus D, Coleman H, Khoo D, Fickling W, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium: The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic, Nat Genet. 2019 Mar;51(3):506-516, epub 2019 Feb 4, doi: 10.1038/s41588-018-0331-5.

  14. Sroka EM, Prado Martins R, Daskalogianni C, Apcher S, Fahraeus R, Origins of neoantigens for the major histocompatibility complex class I pathway, doi 10.1158/2326-6074.CRICIMTEATIAACR18-B187 

  15. Coufalova D⁠, Remnant⁠a L⁠,⁠ Hernychova L⁠, Muller P⁠, Healy⁠ A, Kannan S⁠, Vojtesek⁠ B, Westwood N⁠, Verma CS⁠⁠, Hupp TR⁠, Houston DR⁠,⁠ An inter-subunit protein-peptide interface that stabilizes the specific activity and oligomerization of the AAA+ chaperone Reptin, Journal of Proteomics, doi:10.1016/j.jprot.2019.02.012.

  16. Gonzalez Urionabarrenetxea A, Fahraeus R, Hupp TR, Ball K, Neo-antigen peptide vaccines as emerging cancer therapeutics, The Biochemist Vol. 41 No. 1, 16-21, 2019 February, doi: 10.1042/BIO04101016.

  17. Prado Martins R, Malbert-Colas L, Jose Lista M, Daskalogianni C, Apcher S, Pla M, Findakly S, Blondel M, Fahraeus R, Nuclear processing of nascent transcripts determines synthesis of full-length proteins and antigenic peptides, Nucleic Acids Research, 9 January 2019, doi: 10.1093/nar/gky1296.

 

2018

  1. Prado Martins R, Findakly S, Fahraeus R, Daskalogianni C, In Cellulo Protein-mRNA Interaction Assay to Determine the Action of G-Quadruplex-Binding Molecules, Molecules, 23(12):3124, doi: 10.3390/molecules23123124.

  2. Mohtar MA, Hernychova L, O’Neill R, Lawrence ML, Murray E, Vojtesek B, Hupp TR, The Sequence-specific Peptide-binding Activity of the Protein Sulfide Isomerase AGR2 Directs Its Stable Binding to the Oncogenic Receptor EpCAM, Molecular & Cellular Proteomics, 2018 Apr; 17(4):737-763, epub 2018 Jan 16,  doi: 10.1074/mcp.RA118.000573.